diff --git a/client/cli/bam.py b/client/cli/bam.py index 2ba36ab..20ad2ca 100755 --- a/client/cli/bam.py +++ b/client/cli/bam.py @@ -50,6 +50,7 @@ class bam_config: def find_basedir(cwd=None): """ Return the config path (or None when not found) + Actually should raise an error? """ import os @@ -73,7 +74,8 @@ class bam_config: return None @staticmethod - def load(id_, cwd=None): + def load(id_="config", cwd=None): + import os basedir = bam_config.find_basedir(cwd=cwd) filepath = os.path.join(basedir, id_) @@ -112,8 +114,10 @@ class bam_utils: @staticmethod def session_request_url(req_path): # TODO, get from config + project_config = bam_config.load() + BAM_SERVER = bam_utils.session_find_url() - result = "%s/%s" % (BAM_SERVER, req_path) + result = "%s/%s" % (project_config['url'], req_path) return result @staticmethod @@ -143,6 +147,7 @@ class bam_utils: }, cwd=bam_folder) + print("Project %s initialized" % project_directory_name) @staticmethod @@ -151,6 +156,9 @@ class bam_utils: import os import requests + # Load project configuration + project_config = bam_config.load() + # TODO(cam) multiple paths path = paths[0] del paths @@ -166,7 +174,7 @@ class bam_utils: r = requests.get( bam_utils.session_request_url("file"), params=payload, - auth=("bam", "bam"), + auth=(project_config['user'], project_config['password']), stream=True, ) @@ -228,6 +236,9 @@ class bam_utils: import requests from bam_utils.system import sha1_from_file + # Load project configuration + project_config = bam_config.load() + # TODO(cam) ignore files # TODO(cam) multiple paths @@ -294,7 +305,7 @@ class bam_utils: r = requests.put( bam_utils.session_request_url("file"), params=payload, - auth=('bam', 'bam'), + auth=(project_config['user'], project_config['password']), files=files) print("Return is:", r.text) @@ -306,6 +317,9 @@ class bam_utils: import sys import requests + # Load project configuration + project_config = bam_config.load() + # TODO(cam) multiple paths path = paths[0] del paths @@ -316,7 +330,7 @@ class bam_utils: r = requests.get( bam_utils.session_request_url("file_list"), params=payload, - auth=("bam", "bam"), + auth=(project_config['user'], project_config['password']), stream=True, ) diff --git a/webservice/bam/application/__init__.py b/webservice/bam/application/__init__.py index e5bda52..f50d9aa 100644 --- a/webservice/bam/application/__init__.py +++ b/webservice/bam/application/__init__.py @@ -71,7 +71,7 @@ class FilesListAPI(Resource): args = parser.parse_args() super(FilesListAPI, self).__init__() - def get(self): + def get(self, project_name): path = request.args['path'] if not path: @@ -130,7 +130,7 @@ class FileAPI(Resource): super(FileAPI, self).__init__() - def get(self): + def get(self, project_name): filepath = request.args['filepath'] command = request.args['command'] @@ -191,7 +191,7 @@ class FileAPI(Resource): else: return jsonify(message="Command unknown") - def put(self): + def put(self, project_name): command = request.args['command'] arguments = '' if 'arguments' in request.args: @@ -271,6 +271,6 @@ class FileAPI(Resource): filename.rsplit('.', 1)[1] in app.config['ALLOWED_EXTENSIONS'] -api.add_resource(FilesListAPI, '/file_list', endpoint='file_list') -api.add_resource(FileAPI, '/file', endpoint='file') +api.add_resource(FilesListAPI, '//file_list', endpoint='file_list') +api.add_resource(FileAPI, '//file', endpoint='file')