cleanup: rename suffix argument
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@@ -64,7 +64,7 @@ class bam_config:
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SESSION_FILE = ".bam_paths_remap.json"
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SESSION_FILE = ".bam_paths_remap.json"
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@staticmethod
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@staticmethod
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def find_basedir(cwd=None, suffix=None, abort=False, test_subpath=CONFIG_DIR, descr="<unknown>"):
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def find_basedir(cwd=None, path_suffix=None, abort=False, test_subpath=CONFIG_DIR, descr="<unknown>"):
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"""
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"""
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Return the config path (or None when not found)
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Return the config path (or None when not found)
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Actually should raise an error?
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Actually should raise an error?
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@@ -82,8 +82,8 @@ class bam_config:
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while parent != parent_prev:
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while parent != parent_prev:
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test_dir = os.path.join(parent, test_subpath)
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test_dir = os.path.join(parent, test_subpath)
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if os.path.exists(test_dir):
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if os.path.exists(test_dir):
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if suffix is not None:
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if path_suffix is not None:
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test_dir = os.path.join(test_dir, suffix)
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test_dir = os.path.join(test_dir, path_suffix)
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return test_dir
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return test_dir
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parent_prev = parent
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parent_prev = parent
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@@ -95,13 +95,13 @@ class bam_config:
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return None
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return None
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@staticmethod
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@staticmethod
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def find_rootdir(cwd=None, suffix=None, abort=False, test_subpath=CONFIG_DIR, descr="<unknown>"):
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def find_rootdir(cwd=None, path_suffix=None, abort=False, test_subpath=CONFIG_DIR, descr="<unknown>"):
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"""
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"""
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find_basedir(), without '.bam' suffix
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find_basedir(), without '.bam' suffix
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"""
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"""
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path = bam_config.find_basedir(
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path = bam_config.find_basedir(
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cwd=cwd,
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cwd=cwd,
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suffix=suffix,
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path_suffix=path_suffix,
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abort=abort,
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abort=abort,
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test_subpath=test_subpath,
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test_subpath=test_subpath,
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)
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)
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@@ -133,7 +133,7 @@ class bam_config:
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def load(id_="config", cwd=None, abort=False):
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def load(id_="config", cwd=None, abort=False):
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filepath = bam_config.find_basedir(
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filepath = bam_config.find_basedir(
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cwd=cwd,
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cwd=cwd,
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suffix=id_,
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path_suffix=id_,
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descr="bam repository",
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descr="bam repository",
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)
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)
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if abort is True:
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if abort is True:
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@@ -147,7 +147,7 @@ class bam_config:
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def write(id_="config", data=None, cwd=None):
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def write(id_="config", data=None, cwd=None):
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filepath = bam_config.find_basedir(
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filepath = bam_config.find_basedir(
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cwd=cwd,
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cwd=cwd,
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suffix=id_,
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path_suffix=id_,
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descr="bam repository",
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descr="bam repository",
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)
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)
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