BAM checkout now cares about symlinks
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@@ -333,6 +333,7 @@ class bam_commands:
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# fallback to the basename
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# fallback to the basename
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dst_dir = os.path.splitext(os.path.basename(path))[0]
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dst_dir = os.path.splitext(os.path.basename(path))[0]
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else:
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else:
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output_dir = os.path.realpath(output_dir)
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if os.sep in output_dir.rstrip(os.sep):
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if os.sep in output_dir.rstrip(os.sep):
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# are we a subdirectory?
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# are we a subdirectory?
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# (we know this exists, since we have config already)
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# (we know this exists, since we have config already)
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