paths are now relative to project root when checked out

2014-11-06 14:42:38 +01:00
parent c6e7f2349c
commit 7cb1e806af
3 changed files with 14 additions and 4 deletions
--- a/client/cli/bam.py
+++ b/client/cli/bam.py
@@ -323,7 +323,7 @@ class bam_utils:
                paths_modified[fn_rel] = fn_abs

                # TESTING ONLY
-                fn_abs_remote = os.path.join("/shared/software/bam/storage/bam_test", fn_rel)
+                fn_abs_remote = os.path.join("/pro", fn_rel)
                paths_remap_subset_add[fn_rel] = fn_abs_remote

        del paths_used