de-duplicate code, add generic modules dir

2014-11-05 09:18:37 +01:00
parent b9e8601272
commit 7f57c74f02
5 changed files with 105 additions and 100 deletions
--- a/modules/bam_utils/system.py
+++ b/modules/bam_utils/system.py
@@ -0,0 +1,58 @@
+# ***** BEGIN GPL LICENSE BLOCK *****
+#
+# This program is free software; you can redistribute it and/or
+# modify it under the terms of the GNU General Public License
+# as published by the Free Software Foundation; either version 2
+# of the License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software Foundation,
+# Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
+#
+# ***** END GPL LICENCE BLOCK *****
+
+_USE_COLOR = True
+if _USE_COLOR:
+    color_codes = {
+        'black':        '\033[0;30m',
+        'bright_gray':  '\033[0;37m',
+        'blue':         '\033[0;34m',
+        'white':        '\033[1;37m',
+        'green':        '\033[0;32m',
+        'bright_blue':  '\033[1;34m',
+        'cyan':         '\033[0;36m',
+        'bright_green': '\033[1;32m',
+        'red':          '\033[0;31m',
+        'bright_cyan':  '\033[1;36m',
+        'purple':       '\033[0;35m',
+        'bright_red':   '\033[1;31m',
+        'yellow':       '\033[0;33m',
+        'bright_purple':'\033[1;35m',
+        'dark_gray':    '\033[1;30m',
+        'bright_yellow':'\033[1;33m',
+        'normal':       '\033[0m',
+    }
+
+    def colorize(msg, color=None):
+        return (color_codes[color] + msg + color_codes['normal'])
+else:
+    def colorize(msg, color=None):
+        return msg
+
+
+def sha1_from_file(fn, block_size=1 << 20):
+    with open(fn, 'rb') as f:
+        import hashlib
+        sha1 = hashlib.new('sha1')
+        while True:
+            data = f.read(block_size)
+            if not data:
+                break
+            sha1.update(data)
+        return sha1.hexdigest()
+