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Unzipping, copying and committing server side

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Francesco Siddi
2014-11-04 18:53:55 +01:00
parent d2b335ebea
commit 8015f0d106
1 changed files with 13 additions and 4 deletions
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17
webservice/bam/application/__init__.py
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@@ -183,9 +183,18 @@ class FileAPI(Resource):
# TODO, once all files are uploaded, unpack and run the tasklist (copy, add, remove # TODO, once all files are uploaded, unpack and run the tasklist (copy, add, remove
# files on a filesystem level and subsequently as svn commands) # files on a filesystem level and subsequently as svn commands)
import zipfile import zipfile
tmp_extracted_folder = os.path.splitext(tmp_filepath)[0]
with open(tmp_filepath, 'rb') as zipped_file: with open(tmp_filepath, 'rb') as zipped_file:
z = zipfile.ZipFile(zipped_file) z = zipfile.ZipFile(zipped_file)
z.extractall(os.path.splitext(tmp_filepath)[0]) z.extractall(tmp_extracted_folder)
with open(os.path.join(tmp_extracted_folder, '.bam_paths_remap.json'), 'r') as path_remap:
path_remap = json.load(path_remap)
import shutil
for source_file_path, destination_file_pah in path_remap.items():
shutil.move(os.path.join(tmp_extracted_folder, source_file_path), destination_file_pah)
# TODO, dry run commit (using committ message) # TODO, dry run commit (using committ message)
# Seems not easily possible with SVN # Seems not easily possible with SVN
@@ -194,9 +203,9 @@ class FileAPI(Resource):
combine=True) combine=True)
# Commit command # Commit command
# result = local_client.run_command('commit', result = local_client.run_command('commit',
# [local_client.info()['entry_path'], '--message', arguments['message']], [local_client.info()['entry_path'], '--message', arguments['message']],
# combine=True) combine=True)
print(result) print(result)