extract zipfile on checkout
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@@ -220,9 +220,10 @@ class FileAPI(Resource):
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import zipfile
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tmp_extracted_folder = os.path.splitext(tmp_filepath)[0]
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with open(tmp_filepath, 'rb') as zipped_file:
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z = zipfile.ZipFile(zipped_file)
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z.extractall(tmp_extracted_folder)
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with open(tmp_filepath, 'rb') as zip_file:
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zip_handle = zipfile.ZipFile(zip_file)
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zip_handle.extractall(tmp_extracted_folder)
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del zip_file, zip_handle
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with open(os.path.join(tmp_extracted_folder, '.bam_paths_remap.json'), 'r') as path_remap:
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path_remap = json.load(path_remap)
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