bam cli: correct arg handling
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@@ -230,7 +230,7 @@ class bam_session:
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paths_add[fn_rel] = fn_abs
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paths_add[fn_rel] = fn_abs
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# TESTING ONLY
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# TESTING ONLY
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fn_abs_remote = os.path.join("pro", fn_rel)
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fn_abs_remote = fn_rel
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paths_remap_subset_add[fn_rel] = fn_abs_remote
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paths_remap_subset_add[fn_rel] = fn_abs_remote
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@@ -357,8 +357,7 @@ class bam_commands:
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ID_PAYLOAD = 2
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ID_PAYLOAD = 2
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head = r.raw.read(4)
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head = r.raw.read(4)
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if head != b'BAM\0':
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if head != b'BAM\0':
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print("Bad header...")
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fatal("bad header from server")
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return
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while True:
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while True:
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msg_type, msg_size = struct.unpack("<II", r.raw.read(8))
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msg_type, msg_size = struct.unpack("<II", r.raw.read(8))
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@@ -826,7 +825,7 @@ def main(argv=None):
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if argv is None:
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if argv is None:
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import sys
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import sys
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argv = sys.argv
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argv = sys.argv[1:]
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parser = create_argparse()
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parser = create_argparse()
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args = parser.parse_args(argv)
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args = parser.parse_args(argv)
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